Detailed information of SNP:
|
SNP ID:
sf0407780842(Gbrowse)
Chromosome: chr04 Position: 7780842 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 65.95% | 34.05% |
| All Indica | 775 | 95.87% | 4.13% |
| All Japonica | 491 | 14.05% | 85.95% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 365 | 96.71% | 3.29% |
| Indica II | 207 | 95.65% | 4.35% |
| Indica Intermediate | 203 | 94.58% | 5.42% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 89 | 53.93% | 46.07% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407780842 | A->G | LOC_Os04g13930(LOC_Os04g13930.1) | Non-Synonymous SNP |