Detailed information of SNP:
|
SNP ID:
sf0407784691(Gbrowse)
Chromosome: chr04 Position: 7784691 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 90.73% | 9.27% |
| All Indica | 793 | 97.10% | 2.90% |
| All Japonica | 497 | 79.88% | 20.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 97.30% | 2.70% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407784691 | G->C | INTERGENIC | None |