Detailed information of SNP:
|
SNP ID:
sf0407803925(Gbrowse)
Chromosome: chr04 Position: 7803925 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1310 | 93.82% | 6.18% |
| All Indica | 706 | 90.37% | 9.63% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 54 | 85.19% | 14.81% |
| Indica I | 344 | 91.86% | 8.14% |
| Indica II | 182 | 89.01% | 10.99% |
| Indica Intermediate | 180 | 88.89% | 11.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407803925 | C->T | LOC_Os04g13970(LOC_Os04g13970.1) | Synonymous |