Detailed information of SNP:
|
SNP ID:
sf0407803994(Gbrowse)
Chromosome: chr04 Position: 7803994 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 50.80% | 49.20% |
| All Indica | 756 | 21.69% | 78.31% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 65 | 15.38% | 84.62% |
| Indica I | 354 | 22.32% | 77.68% |
| Indica II | 201 | 21.39% | 78.61% |
| Indica Intermediate | 201 | 20.90% | 79.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407803994 | A->G | LOC_Os04g13970(LOC_Os04g13970.1) | Synonymous |