Detailed information of SNP:
|
SNP ID:
sf0407804051(Gbrowse)
Chromosome: chr04 Position: 7804051 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 94.69% | 5.31% |
| All Indica | 774 | 90.83% | 9.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 87.43% | 12.57% |
| Indica II | 202 | 95.54% | 4.46% |
| Indica Intermediate | 206 | 92.23% | 7.77% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407804051 | G->A | LOC_Os04g13970(LOC_Os04g13970.1) | Synonymous |