Detailed information of SNP:
|
SNP ID:
sf0407805810(Gbrowse)
Chromosome: chr04 Position: 7805810 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 93.97% | 6.03% |
| All Indica | 793 | 92.18% | 7.82% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 372 | 92.47% | 7.53% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 85.24% | 14.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407805810 | C->T | LOC_Os04g13980(LOC_Os04g13980.1) | Synonymous |