Detailed information of SNP:
|
SNP ID:
sf0407812697(Gbrowse)
Chromosome: chr04 Position: 7812697 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 69.28% | 30.72% |
| All Indica | 783 | 46.10% | 53.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 21.77% | 78.23% |
| Indica II | 204 | 75.00% | 25.00% |
| Indica Intermediate | 207 | 61.35% | 38.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407812697 | T->C | LOC_Os04g13990(LOC_Os04g13990.1) | Non-Synonymous SNP |