Detailed information of SNP:
|
SNP ID:
sf0407819079(Gbrowse)
Chromosome: chr04 Position: 7819079 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 65.50% | 34.50% |
| All Indica | 786 | 39.19% | 60.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 11.05% | 88.95% |
| Indica II | 208 | 71.63% | 28.37% |
| Indica Intermediate | 207 | 57.00% | 43.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407819079 | G->A | LOC_Os04g14000(LOC_Os04g14000.1) | INTRON |