Detailed information of SNP:
|
SNP ID:
sf0407819877(Gbrowse)
Chromosome: chr04 Position: 7819877 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 67.95% | 32.05% |
| All Indica | 784 | 43.24% | 56.76% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 16.98% | 83.02% |
| Indica II | 207 | 73.91% | 26.09% |
| Indica Intermediate | 206 | 59.71% | 40.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407819877 | C->T | LOC_Os04g14000(LOC_Os04g14000.1) | Non-Synonymous SNP |