Detailed information of SNP:
|
SNP ID:
sf0407820261(Gbrowse)
Chromosome: chr04 Position: 7820261 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 97.01% | 2.99% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 449 | 93.32% | 6.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 53 | 66.04% | 33.96% |
| Japonica Intermediate | 62 | 98.39% | 1.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407820261 | C->T | LOC_Os04g14000(LOC_Os04g14000.1) | Non-Synonymous SNP |