Detailed information of SNP:
|
SNP ID:
sf0407820320(Gbrowse)
Chromosome: chr04 Position: 7820320 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 66.17% | 33.83% |
| All Indica | 785 | 40.38% | 59.62% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 13.40% | 86.60% |
| Indica II | 206 | 72.33% | 27.67% |
| Indica Intermediate | 206 | 57.28% | 42.72% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407820320 | A->C | LOC_Os04g14000(LOC_Os04g14000.1) | Non-Synonymous SNP |