Detailed information of SNP:
|
SNP ID:
sf0407820955(Gbrowse)
Chromosome: chr04 Position: 7820955 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 90.88% | 9.12% |
| All Indica | 795 | 86.04% | 13.96% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 210 | 73.33% | 26.67% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407820955 | G->A | INTERGENIC | None |