Detailed information of SNP:
|
SNP ID:
sf0407821211(Gbrowse)
Chromosome: chr04 Position: 7821211 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 65.74% | 34.26% |
| All Indica | 786 | 39.69% | 60.31% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 11.83% | 88.17% |
| Indica II | 207 | 71.98% | 28.02% |
| Indica Intermediate | 207 | 57.49% | 42.51% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407821211 | C->T | INTERGENIC | None |