Detailed information of SNP:
|
SNP ID:
sf0407822011(Gbrowse)
Chromosome: chr04 Position: 7822011 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 92.51% | 7.49% |
| All Indica | 795 | 88.05% | 11.95% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407822011 | C->T | INTERGENIC | None |