Detailed information of SNP:
|
SNP ID:
sf0407822495(Gbrowse)
Chromosome: chr04 Position: 7822495 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 57.53% | 42.47% |
| All Indica | 760 | 31.97% | 68.03% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 8.06% | 91.94% |
| Indica I | 366 | 7.38% | 92.62% |
| Indica II | 198 | 62.63% | 37.37% |
| Indica Intermediate | 196 | 46.94% | 53.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407822495 | G->T | INTERGENIC | None |