Detailed information of SNP:
|
SNP ID:
sf0407827582(Gbrowse)
Chromosome: chr04 Position: 7827582 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 52.47% | 47.53% |
| All Indica | 731 | 84.27% | 15.73% |
| All Japonica | 496 | 0.60% | 99.40% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 340 | 84.71% | 15.29% |
| Indica II | 195 | 85.64% | 14.36% |
| Indica Intermediate | 196 | 82.14% | 17.86% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 9 | 44.44% | 55.56% |
| Intermediate | 38 | 39.47% | 60.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407827582 | T->C | INTERGENIC | None |