Detailed information of SNP:
|
SNP ID:
sf0407828833(Gbrowse)
Chromosome: chr04 Position: 7828833 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 93.34% | 6.66% |
| All Indica | 760 | 90.00% | 10.00% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 53 | 79.25% | 20.75% |
| Indica I | 358 | 92.18% | 7.82% |
| Indica II | 205 | 90.73% | 9.27% |
| Indica Intermediate | 197 | 85.28% | 14.72% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407828833 | A->G | INTERGENIC | None |