Detailed information of SNP:
|
SNP ID:
sf0407844562(Gbrowse)
Chromosome: chr04 Position: 7844562 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1372 | 52.99% | 47.01% |
| All Indica | 761 | 84.23% | 15.77% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 356 | 78.93% | 21.07% |
| Indica II | 202 | 89.11% | 10.89% |
| Indica Intermediate | 203 | 88.67% | 11.33% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 12 | 75.00% | 25.00% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407844562 | C->T | INTERGENIC | None |