Detailed information of SNP:



SNP ID: sf0407883204(Gbrowse)

Chromosome: chr04

Position: 7883204
Major allele: G

Minor allele: C

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1320 92.27% 7.73%
All Indica709 88.15% 11.85%
All Japonica497 99.60% 0.40%
Aus59 88.14% 11.86%
Indica I352 93.18% 6.82%
Indica II186 84.95% 15.05%
Indica Intermediate171 81.29% 18.71%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 71.43% 28.57%
Intermediate41 87.80% 12.20%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0407883204 G->C INTERGENIC None