Detailed information of SNP:
|
SNP ID:
sf0407883204(Gbrowse)
Chromosome: chr04 Position: 7883204 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1320 | 92.27% | 7.73% |
| All Indica | 709 | 88.15% | 11.85% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 59 | 88.14% | 11.86% |
| Indica I | 352 | 93.18% | 6.82% |
| Indica II | 186 | 84.95% | 15.05% |
| Indica Intermediate | 171 | 81.29% | 18.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407883204 | G->C | INTERGENIC | None |