Detailed information of SNP:
|
SNP ID:
sf0407990883(Gbrowse)
Chromosome: chr04 Position: 7990883 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 75.46% | 24.54% |
| All Indica | 752 | 72.74% | 27.26% |
| All Japonica | 492 | 78.46% | 21.54% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 344 | 70.35% | 29.65% |
| Indica II | 205 | 81.46% | 18.54% |
| Indica Intermediate | 203 | 67.98% | 32.02% |
| Temperate Japonica | 333 | 95.20% | 4.80% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 66 | 83.33% | 16.67% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407990883 | T->C | INTERGENIC | None |