Detailed information of SNP:
|
SNP ID:
sf0407991303(Gbrowse)
Chromosome: chr04 Position: 7991303 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1374 | 93.74% | 6.26% |
| All Indica | 765 | 90.33% | 9.67% |
| All Japonica | 492 | 97.97% | 2.03% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 354 | 87.29% | 12.71% |
| Indica II | 206 | 98.06% | 1.94% |
| Indica Intermediate | 205 | 87.80% | 12.20% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0407991303 | C->T | INTERGENIC | None |