Detailed information of SNP:
|
SNP ID:
sf0408041608(Gbrowse)
Chromosome: chr04 Position: 8041608 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 57.37% | 42.63% |
| All Indica | 794 | 89.80% | 10.20% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 210 | 75.24% | 24.76% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408041608 | C->T | LOC_Os04g14370(LOC_Os04g14370.1) | INTRON |