Detailed information of SNP:
|
SNP ID:
sf0408047966(Gbrowse)
Chromosome: chr04 Position: 8047966 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 91.69% | 8.31% |
| All Indica | 795 | 96.35% | 3.65% |
| All Japonica | 468 | 82.91% | 17.09% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 209 | 94.74% | 5.26% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 331 | 95.77% | 4.23% |
| Tropical Japonica | 69 | 21.74% | 78.26% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408047966 | T->C | INTERGENIC | None |