Detailed information of SNP:
|
SNP ID:
sf0408049068(Gbrowse)
Chromosome: chr04 Position: 8049068 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 70.49% | 29.51% |
| All Indica | 795 | 96.86% | 3.14% |
| All Japonica | 495 | 23.03% | 76.97% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 209 | 95.69% | 4.31% |
| Temperate Japonica | 334 | 6.29% | 93.71% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408049068 | A->G | INTERGENIC | None |