Detailed information of SNP:
|
SNP ID:
sf0408052366(Gbrowse)
Chromosome: chr04 Position: 8052366 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1349 | 93.03% | 6.97% |
| All Indica | 759 | 92.49% | 7.51% |
| All Japonica | 488 | 98.98% | 1.02% |
| Aus | 53 | 47.17% | 52.83% |
| Indica I | 353 | 94.62% | 5.38% |
| Indica II | 205 | 85.85% | 14.15% |
| Indica Intermediate | 201 | 95.52% | 4.48% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 97.75% | 2.25% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408052366 | T->C | INTERGENIC | None |