Detailed information of SNP:
|
SNP ID:
sf0408052897(Gbrowse)
Chromosome: chr04 Position: 8052897 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 95.87% | 4.13% |
| All Indica | 768 | 97.79% | 2.21% |
| All Japonica | 477 | 93.92% | 6.08% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 367 | 98.64% | 1.36% |
| Indica II | 205 | 97.56% | 2.44% |
| Indica Intermediate | 196 | 96.43% | 3.57% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 75 | 69.33% | 30.67% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 9 | 77.78% | 22.22% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408052897 | C->T | INTERGENIC | None |