Detailed information of SNP:
|
SNP ID:
sf0408053044(Gbrowse)
Chromosome: chr04 Position: 8053044 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.49% | 32.51% |
| All Indica | 798 | 92.11% | 7.89% |
| All Japonica | 497 | 22.54% | 77.46% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408053044 | T->A | INTERGENIC | None |