Detailed information of SNP:
|
SNP ID:
sf0408053216(Gbrowse)
Chromosome: chr04 Position: 8053216 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1369 | 84.08% | 15.92% |
| All Indica | 763 | 74.57% | 25.43% |
| All Japonica | 486 | 97.74% | 2.26% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 353 | 71.39% | 28.61% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 200 | 65.50% | 34.50% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 85 | 94.12% | 5.88% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408053216 | C->T | INTERGENIC | None |