Detailed information of SNP:
|
SNP ID:
sf0408069208(Gbrowse)
Chromosome: chr04 Position: 8069208 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1349 | 54.04% | 45.96% |
| All Indica | 754 | 33.29% | 66.71% |
| All Japonica | 490 | 88.57% | 11.43% |
| Aus | 54 | 25.93% | 74.07% |
| Indica I | 352 | 29.55% | 70.45% |
| Indica II | 203 | 41.38% | 58.62% |
| Indica Intermediate | 199 | 31.66% | 68.34% |
| Temperate Japonica | 333 | 97.60% | 2.40% |
| Tropical Japonica | 89 | 53.93% | 46.07% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408069208 | C->T | INTERGENIC | None |