Detailed information of SNP:
|
SNP ID:
sf0408069274(Gbrowse)
Chromosome: chr04 Position: 8069274 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 58.32% | 41.68% |
| All Indica | 791 | 38.69% | 61.31% |
| All Japonica | 495 | 90.51% | 9.49% |
| Aus | 61 | 49.18% | 50.82% |
| Indica I | 371 | 35.58% | 64.42% |
| Indica II | 212 | 49.53% | 50.47% |
| Indica Intermediate | 208 | 33.17% | 66.83% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 67 | 89.55% | 10.45% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408069274 | C->T | INTERGENIC | None |