Detailed information of SNP:
|
SNP ID:
sf0408098639(Gbrowse)
Chromosome: chr04 Position: 8098639 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1383 | 97.98% | 2.02% |
| All Indica | 767 | 96.61% | 3.39% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 361 | 96.95% | 3.05% |
| Indica II | 204 | 96.57% | 3.43% |
| Indica Intermediate | 202 | 96.04% | 3.96% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408098639 | A->G | LOC_Os04g14490(LOC_Os04g14490.1) | INTRON |