Detailed information of SNP:
|
SNP ID:
sf0408099157(Gbrowse)
Chromosome: chr04 Position: 8099157 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1355 | 53.73% | 46.27% |
| All Indica | 748 | 33.02% | 66.98% |
| All Japonica | 493 | 90.67% | 9.33% |
| Aus | 62 | 19.35% | 80.65% |
| Indica I | 350 | 40.86% | 59.14% |
| Indica II | 198 | 24.24% | 75.76% |
| Indica Intermediate | 200 | 28.00% | 72.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 52.22% | 47.78% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408099157 | T->C | LOC_Os04g14490(LOC_Os04g14490.1) | INTRON |