Detailed information of SNP:
|
SNP ID:
sf0408102330(Gbrowse)
Chromosome: chr04 Position: 8102330 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1332 | 94.82% | 5.18% |
| All Indica | 733 | 94.41% | 5.59% |
| All Japonica | 489 | 96.11% | 3.89% |
| Aus | 58 | 86.21% | 13.79% |
| Indica I | 349 | 97.71% | 2.29% |
| Indica II | 192 | 90.62% | 9.38% |
| Indica Intermediate | 192 | 92.19% | 7.81% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 88 | 85.23% | 14.77% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408102330 | A->G | INTERGENIC | None |