Detailed information of SNP:
|
SNP ID:
sf0408109710(Gbrowse)
Chromosome: chr04 Position: 8109710 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1355 | 89.00% | 11.00% |
| All Indica | 746 | 89.95% | 10.05% |
| All Japonica | 490 | 86.53% | 13.47% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 334 | 86.83% | 13.17% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 202 | 88.61% | 11.39% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 88 | 42.05% | 57.95% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408109710 | T->C | INTERGENIC | None |