Detailed information of SNP:
|
SNP ID:
sf0408137233(Gbrowse)
Chromosome: chr04 Position: 8137233 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1354 | 92.91% | 7.09% |
| All Indica | 746 | 89.14% | 10.86% |
| All Japonica | 492 | 98.17% | 1.83% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 353 | 91.22% | 8.78% |
| Indica II | 201 | 88.06% | 11.94% |
| Indica Intermediate | 192 | 86.46% | 13.54% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408137233 | C->T | INTERGENIC | None |