Detailed information of SNP:
|
SNP ID:
sf0408137240(Gbrowse)
Chromosome: chr04 Position: 8137240 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 97.70% | 2.30% |
| All Indica | 780 | 97.18% | 2.82% |
| All Japonica | 493 | 98.38% | 1.62% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 98.37% | 1.63% |
| Indica II | 205 | 96.10% | 3.90% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408137240 | C->T | INTERGENIC | None |