Detailed information of SNP:
|
SNP ID:
sf0408142838(Gbrowse)
Chromosome: chr04 Position: 8142838 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 95.33% | 4.67% |
| All Indica | 780 | 95.51% | 4.49% |
| All Japonica | 490 | 93.88% | 6.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 96.46% | 3.54% |
| Indica II | 205 | 93.17% | 6.83% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 88 | 72.73% | 27.27% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408142838 | C->A | LOC_Os04g14550(LOC_Os04g14550.1) | INTRON |