Detailed information of SNP:
|
SNP ID:
sf0408156091(Gbrowse)
Chromosome: chr04 Position: 8156091 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 92.36% | 7.64% |
| All Indica | 795 | 89.06% | 10.94% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 93.01% | 6.99% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408156091 | T->C | LOC_Os04g14560(LOC_Os04g14560.1) | Non-Synonymous SNP |