Detailed information of SNP:
|
SNP ID:
sf0408174316(Gbrowse)
Chromosome: chr04 Position: 8174316 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 92.79% | 7.21% |
| All Indica | 774 | 91.73% | 8.27% |
| All Japonica | 491 | 93.48% | 6.52% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 358 | 91.34% | 8.66% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 204 | 88.73% | 11.27% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 89 | 69.66% | 30.34% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408174316 | A->G | LOC_Os04g14580(LOC_Os04g14580.1) | Synonymous |