Detailed information of SNP:
|
SNP ID:
sf0408179405(Gbrowse)
Chromosome: chr04 Position: 8179405 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 96.31% | 3.69% |
| All Indica | 796 | 98.74% | 1.26% |
| All Japonica | 493 | 93.10% | 6.90% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 96.71% | 3.29% |
| Tropical Japonica | 91 | 80.22% | 19.78% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408179405 | C->T | LOC_Os04g14580(LOC_Os04g14580.1) | INTRON |