Detailed information of SNP:
|
SNP ID:
sf0408184365(Gbrowse)
Chromosome: chr04 Position: 8184365 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 50.58% | 49.42% |
| All Indica | 769 | 82.44% | 17.56% |
| All Japonica | 495 | 2.02% | 97.98% |
| Aus | 59 | 57.63% | 42.37% |
| Indica I | 360 | 89.17% | 10.83% |
| Indica II | 205 | 59.02% | 40.98% |
| Indica Intermediate | 204 | 94.12% | 5.88% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 92 | 6.52% | 93.48% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408184365 | G->A | LOC_Os04g14590(LOC_Os04g14590.1) | Non-Synonymous SNP |