Detailed information of SNP:
|
SNP ID:
sf0408184685(Gbrowse)
Chromosome: chr04 Position: 8184685 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 54.18% | 45.82% |
| All Indica | 781 | 82.33% | 17.67% |
| All Japonica | 482 | 7.47% | 92.53% |
| Aus | 61 | 70.49% | 29.51% |
| Indica I | 370 | 92.43% | 7.57% |
| Indica II | 204 | 56.86% | 43.14% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 332 | 0.90% | 99.10% |
| Tropical Japonica | 84 | 35.71% | 64.29% |
| Japonica Intermediate | 66 | 4.55% | 95.45% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408184685 | G->C | LOC_Os04g14590(LOC_Os04g14590.1) | Non-Synonymous SNP |