Detailed information of SNP:
|
SNP ID:
sf0408186419(Gbrowse)
Chromosome: chr04 Position: 8186419 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1293 | 78.50% | 21.50% |
| All Indica | 679 | 61.41% | 38.59% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 307 | 59.28% | 40.72% |
| Indica II | 188 | 56.38% | 43.62% |
| Indica Intermediate | 184 | 70.11% | 29.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408186419 | C->T | INTERGENIC | None |