Detailed information of SNP:
|
SNP ID:
sf0408192172(Gbrowse)
Chromosome: chr04 Position: 8192172 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1364 | 89.44% | 10.56% |
| All Indica | 750 | 82.53% | 17.47% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 354 | 86.16% | 13.84% |
| Indica II | 197 | 82.23% | 17.77% |
| Indica Intermediate | 199 | 76.38% | 23.62% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408192172 | T->C | LOC_Os04g14610(LOC_Os04g14610.1) | INTRON |