Detailed information of SNP:
|
SNP ID:
sf0408197565(Gbrowse)
Chromosome: chr04 Position: 8197565 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 67.13% | 32.87% |
| All Indica | 760 | 95.39% | 4.61% |
| All Japonica | 489 | 18.00% | 82.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 346 | 95.95% | 4.05% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 203 | 96.06% | 3.94% |
| Temperate Japonica | 333 | 3.00% | 97.00% |
| Tropical Japonica | 89 | 76.40% | 23.60% |
| Japonica Intermediate | 67 | 14.93% | 85.07% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408197565 | A->C | LOC_Os04g14620(LOC_Os04g14620.1) | INTRON |