Detailed information of SNP:
|
SNP ID:
sf0408201099(Gbrowse)
Chromosome: chr04 Position: 8201099 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 68.47% | 31.53% |
| All Indica | 789 | 97.72% | 2.28% |
| All Japonica | 496 | 17.94% | 82.06% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 370 | 97.03% | 2.97% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 207 | 98.07% | 1.93% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408201099 | A->G | INTERGENIC | None |