Detailed information of SNP:
|
SNP ID:
sf0408261540(Gbrowse)
Chromosome: chr04 Position: 8261540 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 65.40% | 34.60% |
| All Indica | 796 | 89.70% | 10.30% |
| All Japonica | 497 | 21.13% | 78.87% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408261540 | G->A | LOC_Os04g14710(LOC_Os04g14710.1) | INTRON |
| sf0408261540 | G->A | LOC_Os04g14710(LOC_Os04g14710.2) | INTRON |