Detailed information of SNP:
|
SNP ID:
sf0408272020(Gbrowse)
Chromosome: chr04 Position: 8272020 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1133 | 70.17% | 29.83% |
| All Indica | 540 | 40.56% | 59.44% |
| All Japonica | 490 | 97.35% | 2.65% |
| Aus | 53 | 98.11% | 1.89% |
| Indica I | 268 | 23.13% | 76.87% |
| Indica II | 147 | 68.03% | 31.97% |
| Indica Intermediate | 125 | 45.60% | 54.40% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 87 | 93.10% | 6.90% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 91.67% | 8.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408272020 | C->T | INTERGENIC | None |