Detailed information of SNP:
|
SNP ID:
sf0408287875(Gbrowse)
Chromosome: chr04 Position: 8287875 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1188 | 68.27% | 31.73% |
| All Indica | 614 | 51.79% | 48.21% |
| All Japonica | 471 | 95.54% | 4.46% |
| Aus | 56 | 32.14% | 67.86% |
| Indica I | 274 | 62.77% | 37.23% |
| Indica II | 166 | 41.57% | 58.43% |
| Indica Intermediate | 174 | 44.25% | 55.75% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 73 | 75.34% | 24.66% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 11 | 9.09% | 90.91% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408287875 | T->C | LOC_Os04g14770(LOC_Os04g14770.1) | Synonymous |