Detailed information of SNP:
|
SNP ID:
sf0408288638(Gbrowse)
Chromosome: chr04 Position: 8288638 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1345 | 56.28% | 43.72% |
| All Indica | 733 | 23.60% | 76.40% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 62 | 82.26% | 17.74% |
| Indica I | 346 | 21.68% | 78.32% |
| Indica II | 196 | 25.00% | 75.00% |
| Indica Intermediate | 191 | 25.65% | 74.35% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0408288638 | G->A | INTERGENIC | None |